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Library Research Support Services

Thesis Deposit

All postgraduate research students are required to deposit an electronic copy of their thesis into PEARL, the university's Open Access research repository, via Pure. Older research theses have also been digitized from Library holdings and added to PEARL.

Benefits of depositing your thesis

DOI

DOI permanent identifier

Your thesis will be minted with a DOI (digital object identifier) - a standardised, interoperable, persistent link to your thesis for future citation.

Always share or cite your work using the DOI.

Because your thesis will be open access, sharing the DOI enables tracking services to identify social media attention, news and policy citations of your work through Altmetric and PlumX.

You can follow your Altmetric & PlumX scores on your PEARL thesis record.

CC BY NC licence

Open licence & rights retention

Applying a CC BY-NC licence to your work ensures anyone reusing your work must attribute you, the copyright holder, and stipulates that your work cannot be used for the financial gain of others.

Students retain copyright of their work.

ORCiD

ORCiD for attribution

You can ensure your ORCiD is present in your thesis record.  Your ORCiD will hyperlink to your permanent author profile with your up to date affiliation so that future collaborators who discover your thesis in PEARL will be able to contact you even if you have left the University. 

University of Plymouth

Officially published by University of Plymouth

Thesis deposit via Pure > PEARL is a form of publishing and as such you will need to ensure you have considered any third party copyright included in your work (such as published versions of your articles, images created by others, etc.) and seek permissions or redact material accordingly. 

You may also need to redact any sensitive data that cannot be made public. 

If you need to redact any content, you are required to submit both a full and edited version of your thesis via Pure. 

Only the edited version will be Open Access.

Open Access

Maximum visibility

Depositing your thesis via the internal Pure system into PEARL, the University's Open Access repository, ensures maximum visibility and reach for your work.  Your thesis will also be showcased on the University's Research Portal.

Open access outputs can help you to build your academic reputation within and beyond academia as they will be more findable and easily cited:

  • Open Access publications are cited 18% more on average
  • Open Access publications in repositories receive more diverse citations
  • Open versions of work ensure transparency in the research record by establishing when your work was created and published, which can help combat plagiarism and enforce your copyright

Deposit your thesis via Pure

Thesis layout

University guidelines on the layout and presentation of your thesis are available in the Research Degrees Handbook: available via Moodle (DLE).  

Saving your thesis document (file type)

Please save your main thesis document as a PDF/A, an ISO standard for using the PDF format for long-term archiving of digital documents.  On a standard computer, this is usually actioned by initiating the saving of your Word document as a .pdf and selecting ISO compliant PDF/A prior to the Save action being completed.

YouTube, LinkedIn Learning and the Library’s Ask Desk would also be able to support you with this action. 

What should I deposit?

You should review all the guidance on this page prior to deposit. The guidance will advise as to copyright and sensitive data. In scenarios where you have included 3rd party copyrighted materials or sensitive data in your thesis, these will need redacting. If this applies to you, two versions of your thesis should be deposited: the Full version (accessible to UoP administrators) and an Edited version for public access. In all cases, you should deposit all work assessed e.g. associated multimedia or data/appendices as supplementary files.

File names

You should save the PDF/A version of your thesis using the following filename format:

[year][surname][Student Reference Number][degree].pdf

e.g. 2024smith12345678phd.pdf or 2024khan12345678mphil.pdf

If you are depositing both a full and an edited version of your thesis, use the following naming convention:

Full version: [year][surname][Student Reference Number][degree]_full.pdf

Edited version: [year][surname][Student Reference Number][degree]_edited.pdf

e.g.: 2023smith12345678phd_full.pdf and 2023smith12345678phd_edited.pdf 

If you need to deposit additional multimedia files as that cannot be incorporated into the main PDF file, you should use the same file name with the addition of information about the type of media being deposited.

e.g. 2023smith12345678phd_audio.mpeg

File size limits

Pure and PEARL should be able to take large files however upload will be dependent on local internet connections.  It is always advisable to ensure your file is as small as possible.  Images, tables and graphs will all contribute to the file size of your thesis.  You can use compression tools to keep the size of embedded content small. 

Log in to Pure: https://pure.plymouth.ac.uk

Please note all mandatory fields denoted by red asterisk *

ORCID Brand Guidelines - ORCID

ORCiD is a global non-profit interoperable identifier and attribution service for authors.  Your ORCiD stays with you regardless of where your academic career may take you.  It is often requested by publishers or funders.  

If you would like your ORCiD (author identifier) to display on your thesis record in PEARL so that future collaborators can contact you, you will also need to authenticate your ORCiD in Pure (or create one if you don't have one).  This is actioned via Pure > Edit Profile.  

Setting up your ORCiD in Pure is via the main Pure edit profile functionality and is separate to the thesis deposit process.

How to add or create your ORCiD in Pure
ORCiD FAQs

After deposit

You will be notified via an automated, no reply, email address purehosted@elsevier.com when the Doctoral College has validated your thesis.  Once validated, your thesis will be immediately available on the Research Portal and will feed through to PEARL overnight.  Examples of a thesis on both of these discovery platforms:

Thesis on the Research Portal

Thesis in PEARL - Institutional Repository

Thesis layout

University guidelines on the layout and presentation of your thesis are available in the Research Degrees Handbook: available via Moodle (DLE).  

Saving your thesis document (file type)

Please save your main thesis document as a PDF/A, an ISO standard for using the PDF format for long-term archiving of digital documents.  On a standard computer, this is usually actioned by initiating the saving of your Word document as a .pdf and selecting ISO compliant PDF/A prior to the Save action being completed.

YouTube, LinkedIn Learning and the Library’s Ask Desk would also be able to support you with this action. 

What should I deposit?

You should review all the guidance on this page prior to deposit. The guidance will advise as to copyright and sensitive data. In scenarios where you have included 3rd party copyrighted materials or sensitive data in your thesis, these will need redacting. If this applies to you, two versions of your thesis should be deposited: the Full version (accessible to UoP administrators) and an Edited version for public access. In all cases, you should deposit all work assessed e.g. associated multimedia or data/appendices as supplementary files.

File names

You should save the PDF/A version of your thesis using the following filename format:

[year][surname][Student Reference Number][degree].pdf

e.g. 2024smith12345678phd.pdf or 2024khan12345678mphil.pdf

If you are depositing both a full and an edited version of your thesis, use the following naming convention:

Full version: [year][surname][Student Reference Number][degree]_full.pdf

Edited version: [year][surname][Student Reference Number][degree]_edited.pdf

e.g.: 2023smith12345678phd_full.pdf and 2023smith12345678phd_edited.pdf 

If you need to deposit additional multimedia files as that cannot be incorporated into the main PDF file, you should use the same file name with the addition of information about the type of media being deposited.

e.g. 2023smith12345678phd_audio.mpeg

File size limits

Pure and PEARL should be able to take large files however upload will be dependent on local internet connections.  It is always advisable to ensure your file is as small as possible.  Images, tables and graphs will all contribute to the file size of your thesis.  You can use compression tools to keep the size of embedded content small. 

Log in to Pure: https://pure.plymouth.ac.uk 

Please note all mandatory fields denoted by red asterisk *

  • Click > Add Content

 screenshot of Pure Add Content button

  • Click > Student Thesis > choose your Award from the list

screenshot of pure Add Content choose thesis award

  • Add your title and abstract

screenshot of pure add title abstract

  • Your name (Author) and your department will be autopopulated (do not change these)

screenshot of pure author department prefilled

  • Thesis Award Information
    • Leave the Date of Award set to Year only
    • Sponsors: If applicable, click Add External Organisation to search for an existing funder/sponsor of your studies.  

screenshort of pure thesis award information options

  • If your sponsor is not found you can Create new

screenshot of pure add external sponsor

  • Search for your supervisory team via Add Person.  You can also search add external supervisors in this way.  If any external supervisors are not already in the system you can Create external person.

screenshot of pure add supervisors

  • Keywords: you may choose to add keywords (from controlled vocabulary or enter your own) that summarise the topic of your research to aid discovery of your thesis. 

screenshot of pure thesis add keywords

  • Documents: the onscreen text explains that by depositing your work, you agree to the University publishing your work and ensuring its long term preservation (this is the Deposit Licence Agreement that you should click on and read).

screenshot of pure Add document licence information

  • Add Document opens a new pop up where you can add your files, set the public access date and select a licence for re-use of your work:
    • Attach your full thesis (or full and edited thesis) files as Type > Thesis (ensure your files follow the file naming convention)
    • Attach any additional files e.g. multimedia as Type > Supplementary materials
    • Visibility field: ignore this field - it is an internal Pure function and has no bearing on public access
    • Thesis publication date: you should enter today's date [only enter a date in the future after consulting the guidance further down this guide on Open Access].  If you enter a date in the future, you should also select your reason for doing so from the drop down menu]
    • No value: select CC-BY-NC [This is where you set the licence for re-use of your work.  The University's Doctoral College Board committee approve the CC-BY-NC licence]

screenshot of pure thesis document upload options

  • Links: if your project has a website, you can add this here

screenshot of pure thesis add related links

  • Bibliographical note: is optional and not visible publicly

screenshot of pure add bibliographical  note

  • Relations: if you have other research outputs you have previously deposited via Pure that are connected to your thesis, you can link these here

screenshot of pure thesis add relations

  • Visibility: ignore this field - it is an internal Pure function and has no bearing on public access

screenshot of pure thesis visibility field

  • Status:
    • Entry in progress > Save will save your entry so you can come back to it in future
    • For validation > Save will send your completed entry to the Doctoral College to review
    • REMEMBER TO SAVE YOUR WORK!

screenshot of pure save thesis deposit

ORCID

ORCiD is a global non-profit interoperable identifier and attribution service for authors.  Your ORCiD stays with you regardless of where your academic career may take you.  It is often requested by publishers or funders.  

If you would like your ORCiD (author identifier) to display on your thesis record in PEARL so that future collaborators can contact you, you will also need to authenticate your ORCiD in Pure (or create one if you don't have one).  This is actioned via Pure > Edit Profile.  

Setting up your ORCiD in Pure is via the main Pure edit profile functionality and is separate to the thesis deposit process.

After deposit

You will be notified via an automated, no reply, email address purehosted@elsevier.com when the Doctoral College has validated your thesis.  Once validated, your thesis will be immediately available on the Research Portal and will feed through to PEARL overnight.  Examples of a thesis on both of these discovery platforms:

Depositing the Full or Full & Edited versions of your thesis?

We also recommend you attend the Library's workshop:

 

What should you upload (deposit)?

Always upload the full version of your thesis as Type > Thesis in Pure plus any associated files as Type > 'Supplementary materials' e.g. videos or sound files, where these files are integral to the thesis and were part of your examination (supporting Practice Based Research & reproducibility).

The rest of this guidance applies the following scenarios:
If the full version includes content that infringes third party copyright, a confidentiality agreement or is sensitive data then you should also upload an edited version for Open Access publication where this content has been redacted and the full version will be permanently embargoed by the Doctoral College.

Both versions of your thesis should be uploaded as Type > Thesis in Pure.

screenshot Pure thesis deposit

 

Including third party copyright materials in your thesis

Any content in your thesis that is not your own e.g. photos taken by other people, even if this information was found free on the internet, will be under copyright (third party materials).

In the absence of a clear re-use licence (e.g. Creative Commons) explaining how you can reuse this material and under what conditions, you should assume there are no rights beyond Fair Dealing. In which case, you will either need to seek permissions to re-use this content in your published thesis (and include this permission within your document) or redact it and submit an edited version alongside the full version.

This is only the case if your copying is substantial. Small extracts are likely to be covered by one of the copyright exceptions under 'fair dealing'.

If you are simply quoting other people's work e.g. paraphrasing and quoting/citing as part of your critical writing, simply referencing in the normal way is all that is required.

Third party copyright - Fair Dealing

Exceptions under current Copyright law allow you to copy material for the purposes of non-commercial research and private study within reasonable limits. This is known as 'Fair Dealing'. This generally permits you to make single copies of small amounts of a copyright work. Fair dealing rules:

1) The purpose of the use is non-commercial research and/or private study
2) The use of the materials is fair
3) The use is made by researchers or students for their own use only
4) Researchers give credit to the copyright holder

Fair dealing is a UK law which allows exceptions to copyright law if less than a substantial part of third party material is used for criticism, reporting, or research and private study, however what is classed as insubstantial or insignificant portion is not specified by law, and varies on a case by case basis. It also looks at how the use of material affects the market for the original work, which will vary depending on the material, publisher and use in the thesis.

For example:
Two lines of a book may be insubstantial, but two lines of a haiku are almost the whole text. A film still may only be a fraction of the whole film, but if it depicts the climax of the film it would be a significant piece of material and could dissuade people from buying the original film.

Third party material used in theses should be assessed on a case by case basis.

Third party copyright - Seeking permissions

If you feel your use of the third party material extends beyond Fair Dealing, you should seek permission to include this material within the electronic version of your thesis.

You will need to contact the rights holder which may be the author of a work, a publisher, an illustrator, photographer, etc. In the case of material from books and journals your first course of action should be to contact the publisher. Many publishers give details on their website of how to seek permission and who to contact. Look for information on rights/permissions/copyright clearance. If the publisher does not hold the rights to the work they should forward your enquiry to whoever does.

Once you have established who to contact you can use the template in the Preparing your thesis for deposit: full guidance document attached below as a basis of a letter or e-mail to the rights holder, asking permission to include the material in the electronic version of your thesis.

Third party copyright - Permission granted

If a copyright holder indicates that permission has been granted you should indicate this at the appropriate point in your thesis:

e.g. 'Permission to reproduce this ... has been granted by...'

You should permanently retain any letters or e-mails you receive from rights holders.

Third party copyright - Permission denied/no response

Where you do not have permissions (or receive no response from the copyright holder) to reproduce third party content, you will need to redact that content and make this clear in your thesis for readers by entering a placeholder for this content e.g.:

e.g.: Figure (Text/Chart/Diagram/image etc.) has been removed due to Copyright restrictions.

You should provide a link or reference in its place. You can change this wording as appropriate.

Sensitive data – redacting content

Where your thesis includes sensitive information that cannot be made public, you will need to redact that content and make this clear in your thesis for readers by entering a placeholder for this content e.g.:

e.g.: Figure (Text/Chart/Diagram/image etc.) has been removed due to confidentiality.

[See further examples of Data Access Statements provided on the Library's Research Data Management guide.]

Edited version for deposit

You have now redacted any third party content you do not have permissions to republish or sensitive information that should not be public from the public thesis.

In these cases you will submit two versions of your thesis to Pure > PEARL.

You should deposit both the full and edited versions of your thesis according to the File naming convention in the full guidance document.

Both versions of your thesis should be uploaded as Type > Thesis in Pure.

The ‘full’ thesis will be closed access for UoP administrators. Only the ‘edited’ version will be open access for public re-use.

Licencing your open access thesis

Licencing your thesis: select CC BY-NC
CC BY NC licence

screenshot of Pure thesis licence optionsYou will retain the copyright to your published open access thesis. A Creative Commons machine readable re-use licence will make it clear for readers who find your work to understand what they are allowed to do with it.

The University's Doctoral College Board approves CC BY-NC licence as the recommended licence for theses which makes clear that your work cannot be used for commercial gain.

Note that most research funders require the most 'open' of licences (CC-BY) for outputs of funded research to encourage maximum reuse and application of the research findings.  Authors/creators are always attributed as copyright holders regardless of the licence chosen.
 

What are Creative Commons licences?

CC licences provide clear indication of how work may be used, reused and distributed.  There is a standard, machine readable logo for each licence type and the general public clicking on these logos will find a clear explanation of how the work can and cannot be used.  Creative Commons licences can be as restrictive or as Open as required.  Often, they are used by creators and authors to remove some of the barriers to reuse of their work to encourage future development. 

There are six main Creative Commons licenses - you can find out more about these on the Creative Commons website

Open Access & Publishing from your thesis

Open Access in Pure

When you deposit your work via Pure into PEARL you are asked to enter a Thesis publication date.  Choose today's date to ensure maximum visibility and reach for your work:

screenshot of pure thesis embargo date picker

 

What is an embargo and should I apply one?

An embargo is a temporary lock applied to your thesis that prevents public download until the end of the embargo period. 

Most theses can be made immediately available and students should select today's date in the 'Thesis publication date' field.  This is in line with most research funders' open access policies e.g. UKRI, NIHR, Wellcome, who require authors to ensure immediate open access to publications.


However, in specific circumstances, you can opt to select a date up to 1 year in the future to place a temporary embargo upon your work.  

Temporary embargo scenarios

Pure asks you to select the reason you are choosing to place a temporary embargo upon your work:

  • Patent/commercial sensitivity This reason can also apply to Accepted Manuscripts of your recent publications you may have included in your thesis which may still be under publisher embargo (see tab: 'Including your published articles in your thesis'.)  
  • Material of thesis of significance to an individual's personal safety Do not select this option.  If there is sensitive data, this should be redacted entirely.  See guidance on this page: 'Deposing the Full or Full & Edited versions of your thesis."
  • Publication pending You do not typically need to embargo your work in order to publish from it (see next tab: 'Publishing from your thesis' for more information).  If you select this option, you may be contacted by the Library or Doctoral College to assist in any negotiations with your publisher.  

 

Publishing from your thesis

You do not typically need to embargo your work in order to publish from it. 

Students may wish to embargo for purposes of future publication opportunities based on your thesis. However, these days, many publishers do not view thesis publishing as prior publication and in any case would usually require a substantial review of structure for a new audience. Therefore, to publish from your thesis is rarely a reason to apply an embargo period.

PEARL is a non-commercial archive of University outputs. Most publishers are understanding of the purpose of open theses via repositories and have stated that an open thesis is not considered prior publication.
 

Publishing chapters from your thesis as journal articles

  • Nature​: "Nature Portfolio will consider submissions containing material that has previously formed part of a PhD or other academic thesis which has been published according to the requirements of the institution awarding the qualification."
  • Elsevier: (scroll to question on prior publication) "Elsevier does not view the following uses of a work as prior publication: ... publication as an academic thesis."
  • Wiley: "The following types of “prior publication” do not present cause for concerns about duplicate or redundant publication:....Dissertations and theses in university archives."
     

Publishing your thesis as a monograph

Many publishers recognise that a book based on a thesis would undergo extensive revision and so would be substantially different from your open access thesis:

  • Cambridge University Press: ‘A monograph based on a thesis would only be considered for publication after extensive revision. Therefore, an embargo on the original thesis is not generally an essential requirement.’
  • Palgrave Macmillan and Edinburgh, Liverpool and Manchester University Presses are further examples of publishers who accept proposals based on theses, even when they have been made available in online repositories.  This is because theses must be significantly revised in order to be considered for publication.

Some publishers, such as Routledge, have no blanket policy but will look at each case on an individual basis. 

If you are approached by publishers purporting to publish your thesis without any revisions you should be careful to accept such offers and discuss with your supervisors or the Library. 

Advice on revising your thesis for monograph publication:

Including your published articles in your thesis 

If you have published articles you would like to include in your thesis you will need to consider whether you signed your copyright away to the publisher upon publication:

  • If your paper is Open Access on the publisher site and licenced CC-BY, you will be able to include the publisher's .pdf version i.e. because the author has retained the copyright. This is known as Gold open access.
  • Most authors though find that their publisher owns the copyright of their work. If your paper is behind a paywall then copyright will be the publisher's.  With paywalled articles, you can usually include the Author's Accepted Manuscript version into your thesis.  This is known as Green open access.

Accepted Manuscripts

This is the version of your work that has been through peer review with revisions made. It has not yet been typeset by the publisher. It will likely be a word document. Publishers' copyright policy often states you are permitted to share these versions publicly subject to an embargo period.

You can check your publisher's embargo period for your journal using JISC's Open Policy Finder tool: https://openpolicyfinder.jisc.ac.uk/  or contact the Library with any queries: openresearch@plymouth.ac.uk or your Information Specialist.

If your publisher requires an embargo you can select the date on which the remaining embargo period expires within the deposit workflow in Pure.  Remember that the embargo applies from the date of publication of the article, not your thesis deposit.  Depending on when your paper was published, the embargo may already have elapsed.

Please contact your Information Specialist in the Library with any questions about Accepted Manuscripts (informationspecialists@plymouth.ac.uk).

Graphic: what is the accepted manuscript? [A timeline of the publication process. The accepted manuscript comes from the point of acceptance, after the peer review and editing process, but before transfer of copyright and typesetting.

Commercial/Patent sensitivity

This is a common reason for requiring an embargo e.g. signing a confidentiality agreement with an industrial partner.  You can select a date up to 1 year in the future via the deposit workflow in Pure.  If you require a longer period, please see the 'extended embargos' tab for more information.

Ethical or personal data concerns

A temporary embargo is unlikely to be a good fit for these scenarios.  Typical scenarios may be:

  • Your thesis contains some information that should not be public but if this material were to be redacted, the thesis would still be a coherent whole and able to be made publicly available.  In which case, follow the instructions in this guide for Depositing the Full or Full and Edited versions of your thesis.  (An example may be locations of endangered species).
     
  • Your thesis contains information weaved throughout the document and would not be readable if this were possible to redact.  In which case, consult with your DoS/Supervisor and the Doctoral College directly to determine if a permanent embargo with no edited version available would be possible following deposit via Pure.  This is a very rare scenario and the permanent embargo would need to be applied in the system by the Doctoral College. 

Extended embargos

In rare cases, there may be a requirement to extend an embargo beyond 1 year.  This would require DoS approval before application.  If you feel this applies to your work, please deposit as usual, selecting an embargo date of 1 year in the future.  When you have DoS/supervisor approval, complete the following form and forward emailed approval from your DoS to the address given in the form:

Your extended embargo period will be applied once your thesis deposit has been approved by the Doctoral College.

 

Further support for thesis deposit